> ## Documentation Index
> Fetch the complete documentation index at: https://bagel.softnanolab.com/llms.txt
> Use this file to discover all available pages before exploring further.

# Enzyme Variants

> Stub: BAGEL enzyme-variant workflows mapped to source scripts

## Objective

Stub page for enzyme-variant workflows in BAGEL. This page is currently a source map and will be expanded later.

## Source scripts

* `bagel/scripts/mimic_enzymes/mimic_via_embeddings.py`
* `bagel/scripts/technical-report/mimic_oxidoreductase.py`
* `bagel/scripts/technical-report/selective_zinc_finger.py`

## Current status

* Status: `Stub`
* Expansion state: planned

## Known dependencies

* BAGEL (`biobagel`) installation
* Embedding oracle (ESM2) and optionally folding oracle (ESMFold)
* Oracle backend: Modal or local GPU

## Expansion checklist

* [ ] Add complete enzyme-variant generation walkthrough
* [ ] Add conservation/immutability setup section
* [ ] Add analysis section for sampled variant pools
* [ ] Add filtering criteria before experimental prioritization