<?xml version="1.0" encoding="UTF-8"?>
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9" xmlns:news="http://www.google.com/schemas/sitemap-news/0.9" xmlns:xhtml="http://www.w3.org/1999/xhtml" xmlns:image="http://www.google.com/schemas/sitemap-image/1.1" xmlns:video="http://www.google.com/schemas/sitemap-video/1.1">
    
  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/analysis/analyzer</loc>
    <lastmod>2026-02-23T13:00:30.449Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/analysis/simulated-tempering-analyzer</loc>
    <lastmod>2026-02-23T13:00:30.451Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/callbacks/callback</loc>
    <lastmod>2026-02-12T17:32:08.680Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/callbacks/default-logger</loc>
    <lastmod>2026-02-23T12:31:08.343Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/callbacks/early-stopping</loc>
    <lastmod>2026-02-12T17:32:08.876Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/callbacks/folding-logger</loc>
    <lastmod>2026-02-23T12:31:08.337Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/callbacks/wandb-logger</loc>
    <lastmod>2026-02-12T17:32:08.880Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/core/chain</loc>
    <lastmod>2026-02-23T12:31:11.861Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/core/chain-chain</loc>
    <lastmod>2026-02-23T12:31:11.863Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/core/state</loc>
    <lastmod>2026-02-23T12:31:11.861Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/core/system</loc>
    <lastmod>2026-02-23T12:31:11.864Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/chemical-potential</loc>
    <lastmod>2026-02-23T12:31:11.863Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/embeddings-similarity</loc>
    <lastmod>2026-02-23T12:31:11.866Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/energy-term</loc>
    <lastmod>2026-02-23T12:31:11.867Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/flex-evo-bind</loc>
    <lastmod>2026-02-23T12:31:11.865Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/globular</loc>
    <lastmod>2026-02-23T12:31:11.862Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/hydrophobic</loc>
    <lastmod>2026-02-23T12:31:11.865Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/lis-energy</loc>
    <lastmod>2026-02-23T12:31:15.769Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/overall-plddt</loc>
    <lastmod>2026-02-23T12:31:15.770Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/pae-energy</loc>
    <lastmod>2026-02-23T12:31:15.767Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/plddt-energy</loc>
    <lastmod>2026-02-23T12:31:15.769Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/ptm-energy</loc>
    <lastmod>2026-02-23T12:31:15.771Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/ring-symmetry</loc>
    <lastmod>2026-02-23T12:31:15.768Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/secondary-structure</loc>
    <lastmod>2026-02-23T12:31:15.771Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/separation</loc>
    <lastmod>2026-02-23T12:31:15.773Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/surface-area</loc>
    <lastmod>2026-02-23T12:31:15.772Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/energies/template-match</loc>
    <lastmod>2026-02-23T12:31:15.774Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/minimizer/minimizer</loc>
    <lastmod>2026-02-23T12:31:18.710Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/minimizer/monte-carlo</loc>
    <lastmod>2026-02-23T12:31:18.703Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/minimizer/simulated-annealing</loc>
    <lastmod>2026-02-23T12:31:18.714Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/minimizer/simulated-tempering</loc>
    <lastmod>2026-02-23T12:31:18.707Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/mutation/canonical</loc>
    <lastmod>2026-02-23T12:31:18.709Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/mutation/grand-canonical</loc>
    <lastmod>2026-02-23T12:31:18.715Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/mutation/mutation-protocol</loc>
    <lastmod>2026-02-23T13:00:30.507Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/oracles/esm2</loc>
    <lastmod>2026-02-23T12:58:42.076Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/oracles/esmfold</loc>
    <lastmod>2026-02-23T12:31:19.314Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/oracles/oracle</loc>
    <lastmod>2026-02-23T12:31:19.315Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/bagel-api/overview</loc>
    <lastmod>2026-02-23T12:31:19.816Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/boileroom-api/getting-started</loc>
    <lastmod>2026-02-23T12:31:19.820Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/boileroom-api/models/boltz2</loc>
    <lastmod>2026-02-23T12:31:19.819Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/boileroom-api/models/chai1</loc>
    <lastmod>2026-02-23T12:31:19.815Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/boileroom-api/models/esm2</loc>
    <lastmod>2026-02-23T12:31:19.814Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/boileroom-api/models/esmfold</loc>
    <lastmod>2026-02-23T12:31:19.818Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/boileroom-api/overview</loc>
    <lastmod>2026-02-23T12:31:19.817Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/boileroom-api/reference/backends</loc>
    <lastmod>2026-02-23T12:31:19.818Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/boileroom-api/reference/configuration</loc>
    <lastmod>2026-02-23T12:31:19.821Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/boileroom-api/reference/output-types</loc>
    <lastmod>2026-02-23T12:31:19.821Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/case-studies/enzyme-variants</loc>
    <lastmod>2026-02-23T12:31:20.804Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/case-studies/simple-peptide-binder</loc>
    <lastmod>2026-02-23T12:31:20.812Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/case-studies/targeting-intrinsically-disordered-regions</loc>
    <lastmod>2026-02-23T12:31:20.808Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/concepts</loc>
    <lastmod>2026-02-23T12:31:20.811Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/customization/custom-callbacks</loc>
    <lastmod>2026-02-23T12:31:20.810Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/customization/custom-energy-terms</loc>
    <lastmod>2026-02-23T12:31:21.794Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/customization/custom-minimizers</loc>
    <lastmod>2026-02-23T12:31:21.794Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/customization/custom-mutation-protocols</loc>
    <lastmod>2026-02-23T12:31:21.792Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/customization/custom-oracles</loc>
    <lastmod>2026-02-23T12:31:21.795Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com/getting-started</loc>
    <lastmod>2026-02-23T12:31:21.796Z</lastmod>
  </url>

  <url>
    <loc>https://bagel.softnanolab.com</loc>
    <lastmod>2026-02-23T12:31:21.798Z</lastmod>
  </url>
</urlset>