DefaultLogger

This logger writes:

energies.csv with step, per-state energy terms, per-state total energies, and system_energy
per-state FASTA files with sequences
per-state mask FASTA files with mutability masks

It does not write structures; use FoldingLogger for structure outputs.

Parameters

int

required

Interval (in steps) at which to log the current system.

Parameters

CallbackContext

required

Parameters

CallbackContext

required

import bagel as bg

callbacks = [
    bg.callbacks.DefaultLogger(log_interval=10),
]