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This logger writes:
  • energies.csv with step, per-state energy terms, per-state total energies, and system_energy
  • per-state FASTA files with sequences
  • per-state mask FASTA files with mutability masks
It does not write structures; use FoldingLogger for structure outputs.

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Parameters

​
log_interval
int
required
Interval (in steps) at which to log the current system.

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Methods

​
on_optimization_start

Parameters
​
context
CallbackContext
required

​
on_step_end

Parameters
​
context
CallbackContext
required

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Example

import bagel as bg

callbacks = [
    bg.callbacks.DefaultLogger(log_interval=10),
]