FoldingLogger

Parameters

FoldingOracle

required

The FoldingOracle instance to log (e.g. an ESMFold instance).

int

required

Interval (in steps) at which to log structures for the current system.

Methods

on_optimization_start

Parameters

CallbackContext

required

on_step_end

Parameters

CallbackContext

required

Example

import bagel as bg

esmfold = bg.oracles.ESMFold(use_modal=True)
callbacks = [
    bg.callbacks.FoldingLogger(folding_oracle=esmfold, log_interval=50),
]

DefaultLogger

EarlyStopping

Overview

Core

Energies

Minimizers

Mutation

Oracles

Callbacks

Analysis

FoldingLogger

Parameters

Methods

on_optimization_start

on_step_end

Example

​Parameters

​Methods

​on_optimization_start

​on_step_end

​Example

Parameters

Methods

on_optimization_start

on_step_end

Example