Residue

Parameters

str

required

Type of the amino acid in one-letter format (upper-cased)

str

required

ID of the polymer chain this residue belongs to

int

required

Internal index of the residue in the chain (0 to len(chain)-1, i.e. 0-indexed)

bool

default:"True"

Whether the residue can be mutated

String representation of amino acid in 3-letters format.

import bagel as bg

residue = bg.Residue(name='A', chain_ID='X', index=0)
three_letter = residue.three_letter_name  # 'ALA'